PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00206.1.g00450.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 556aa    MW: 59109.8 Da    PI: 8.5464
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00206.1.g00450.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-30221279259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +v+++tYeg+Hnh+
  Zpz_sc00206.1.g00450.1.am.mk 221 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCSVRKQVQRCAEDRTVLITTYEGSHNHP 279
                                   7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-33205281IPR003657WRKY domain
SuperFamilySSF1182902.48E-27213281IPR003657WRKY domain
PROSITE profilePS5081129.861215281IPR003657WRKY domain
SMARTSM007741.4E-35220280IPR003657WRKY domain
PfamPF031063.0E-26222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTMSMRAEIK EVLVLFWVFS SSSSSSSLCG QLESTKVELR QSKEEIQRLR KIVSDLSARY  60
QSLHAHFVAF MQQQRNLEVP RPEQQLNVDP EKKEQDASPL PKQLISLDVG ADAAPSPGSS  120
LAGSALPPQL MDYSPGGTGT GNGGGRMPLP TFDQHRHRLH ERVGSPEEAP PPQHVTQGWL  180
ASPSKVPKFL PAKTPEPVPE AATMRKARVS VRARSEAAMI SDGCQWRKYG QKMAKGNPCP  240
RAYYRCTMAA GCSVRKQVQR CAEDRTVLIT TYEGSHNHPL PPAAMAMAST TAAAASMLLS  300
GSMPSADGSL MAGSNFLARA VLPCSSSVAT ISASAPFPTV TLDLTQPAPP AASSSCSLAE  360
PAQLKAALAE AARPVQLPQL FGQKLYDHGK LSAVQAAAGV KATDGGAIAD TVSAAAAITS  420
DPNFTAVLAA AITSYIGSSG TVQPMASGGA DNSYADFERS GWQHDTEGAE SISRFRCPSL  480
RSGHAFDTSP VHVGRSTVPW SLLNRHTVEE RRADLVTERT DEVEYCGRLD RPAPNSAPRQ  540
SSITLLGSRL LPRGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-23211281877Probable WRKY transcription factor 4
2lex_A9e-23211281877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-139AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149611e-139AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638691.11e-150PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-102WRK42_ARATH; Probable WRKY transcription factor 42
TrEMBLA0A0E0L5U91e-154A0A0E0L5U9_ORYPU; Uncharacterized protein
STRINGSi024078m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-60WRKY family protein